This page is currently under construction; thank you for your understanding.
IFB/ELIXIR-FR and its platforms offer a range of services to support research: data resources, software tools, computing infrastructure, training, open science, working groups and community engagement.
Services offered by IFB/ELIXIR-FR
- ABiMS
- IFB-core
- GenOuest
Some platforms offer support services (covering data management, workflow implementation, data analysis, interpretation of results, etc.), project collaborations, or partnerships with research teams to help set up projects. You can contact a platform based on your geographical location.
- Services not listed in the SDP ELIXIR*:
- Portals ATLASEA (IFBcore, ABiMS, GenOuest)
- Portal Phaeoexplorer (ABiMS)
- Portal Phaeoexplorer (ABiMS)
- MyGOD (ABiMS)
- TARA metaB ressources (ABiMS)
- Cyanorak (ABiMS)
- SDP-ELIXIR-FR:
- AgroLD
- GnpIS
- Gigwa
- GenomeHubs
- Portails: FAIDARE, WheatIS
The data resources can be found directly in the IFB/ELIXIR-FR catalogue.
- Pan1c: pipeline for generating pan-genome graphs
- Abyss: tool for visualising and querying pan-genome graphs
- metagWGS: shotgun metagenomics data processing pipeline.
- BEAURIS
SDP ELIXIR-FR:
- Lifemap
- Phylogeny.fr
- PhyML
Our full range of thematic datasets (non-sensitive data only) is available on our designated page.
The national UseGalaxy.fr Galaxy server dedicated to this theme: https://biodiversity-genomics.usegalaxy.fr/
The other available thematic areas are also listed on our designated page.
- Fair-Data Miappe
- Galaxy Training Network (GTN)
- Training metab ABiMS of SeBimer
- Training EB3I: Assemblage annotation
- School ATLASEA
For multi-disciplinary training courses, please see the training programme offered by IFB/ELIXIR-FR.
A range of general-purpose, multi-domain tools are available, such as Fair-checker, madbot and DSW.
You can also find the specific guidelines for this subject area in the ELIXIR RDMkit (the research data management toolkit for the life sciences):
- RDMkit metabarcoding (currently in development)
- Biodiversity
- Marine metagenomics
- Virology
- Community Biodiversity IFB/PNDB
- Community Biodiversity ELIXIR
- ERGA / BGE